A key difference is that in CRI Atom Craft LE, "commercial" targets such as PS4 or XBoxOne cannot be selected.
In CRI Atom Craft LE, only Public (PC/Mac, iPhone, Android) and Unity plug-ins are supported.
CRI Atom Craft LE is a special version aimed at indie game developers and
more generally people who want to learn about game audio (for example through game jam events).
Note that it is not indented to be used in conjunction with the full commercial version. It is protected so that data for commercial targets (PS4, XBoxOne etc...) cannot be played back.